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Topic: All Topics Classification Cloud Computing Coronavirus Deep Learning Discovery Dna Viruses Genome Annotation Genome Assembly High Throughput Machine Learning Metagenomics Multi Classifier Multiple Sequence Alignment Orf Prediction Phylogenetics RdRp Detection RNA Virus Identification Rna Viruses Specialized Assembly Taxonomy Viral Genomes Virus Identification

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Tool Name	Description	Language	Topics	Package Manager	Platforms	License	Version
coronaSPAdes	Specialized assembler for coronavirus genomes and other RNA viral sequences	C++	Genome Assembly Coronavirus Rna Viruses Specialized Assembly	bioconda		GPL-2.0	3.15.5
DeepVirFinder	Deep learning method for identifying viral sequences from metagenomic data	Python	Virus Identification Machine Learning Deep Learning Metagenomics	github	linux, macos	MIT	1.0
metaviralSPAdes-RNA	Modified metaSPAdes assembler optimized for RNA viral genome assembly from metagenomic data	C++	Genome Assembly Rna Viruses Metagenomics Specialized Assembly	bioconda		GPL-2.0	3.15.5
palmID	Identifies and classifies RNA virus sequences based on the conserved RdRp palm domain	C++	RNA Virus Identification RdRp Detection Classification Taxonomy	github	linux, macos, windows	GPL-3.0	1.0
RdRp-scan	Fast profile-based detection of RNA-dependent RNA polymerase (RdRp) sequences for exploring the 'dusk matter' of the RNA virosphere	Python	RNA Virus Identification RdRp Detection Metagenomics	bioconda		None	None
Serratus	Ultra-high throughput discovery of RNA viruses from public sequencing data using cloud computing	Python	RNA Virus Identification Cloud Computing High Throughput Discovery	bioconda		GPL-3.0	1.0
VIGOR	Viral genome ORF reader for annotation of viral genomes, including RNA viruses	Perl	Genome Annotation Orf Prediction Viral Genomes Rna Viruses	bioconda		GPL-3.0	4.1.20200702
ViralMSA	Massively scalable reference-guided multiple sequence alignment of viral genomes, including RNA viruses	Python	Phylogenetics Multiple Sequence Alignment Viral Genomes Rna Viruses	bioconda		GPL-3.0	1.1.44
VirSorter2	Multi-classifier approach to detect diverse DNA and RNA virus sequences	Python	Virus Identification Multi Classifier Rna Viruses Dna Viruses	bioconda		GPL-2.0	2.2.4